- Assess a partner's financial capacity proportionately and derive a risk level and suitable modalities from it.
- Draft and manage a sub-grant agreement: payments, accounting for funds, checks and closeout.
- Reconcile risk control and localisation: sharing indirect costs, capacity strengthening and an equitable relationship.
Keep the course at home: free PDF handout with exercises, key takeaways and quiz answers.
1Why and how to fund partners
A growing share of aid flows through national and local partners: NGOs, associations, women's organisations, Red Cross and Red Crescent national societies. They often have better access, better acceptance and a lasting presence. The Grand Bargain commitment (2016) aimed to channel at least 25% of humanitarian funding as directly as possible to local and national actors, a target that is still far from being met.
Legally, the organisation that receives the grant (the prime recipient) generally remains responsible to the donor for all expenditure, including partners' expenditure: if a partner makes a mistake or commits fraud, it is the prime recipient that repays. This responsibility explains the control requirements; it does not justify transferring all risks to partners without giving them the means to manage them.
An equitable partnership is judged on three things: the share of decisions the partner really takes, the share of indirect costs it receives, and how risks (security, financial) are shared.
2Capacity assessment and risk level
Before signing, a capacity assessment (due diligence) is carried out, proportionate to the amount and the risk. It covers:
- Governance and legality: registration, statutes, an active board, no unmanaged conflicts of interest, screening against sanctions lists.
- Financial management: accounts kept in software or a reliable system, bank reconciliations, segregation of duties, procurement policy, recent audited financial statements.
- Human resources: contracts, compliant payroll, safeguarding policies (protection from sexual exploitation and abuse, child protection).
- Programme capacity: experience, access, quality of reporting.
The result is a risk level (low, medium, high, very high) that determines the modalities, modelled on the HACT approach of UN agencies or the pooled funds managed by OCHA:
| Risk | Payments | Accounting for funds | Controls |
|---|---|---|---|
| Low | Large quarterly advances | Quarterly financial report | Annual spot check, audit depending on the amount |
| Medium | Advances in instalments | Report and transaction list | Six-monthly spot checks |
| High | Small instalments, or direct payment of certain expenses | Monthly reports with supporting documents | Quarterly checks, close monitoring |
The risk level is not a final judgement: it should fall as capacities are strengthened, which requires a concrete, funded plan.
3The sub-grant agreement
The agreement with the partner flows down the donor's obligations: eligibility, procurement, visibility, sanctions, safeguarding, record retention, audit and right of access. It also specifies what is specific to the partnership:
- The partner's budget, built with the partner, including its actual staff and overhead costs.
- The payment modalities according to the risk level, and the prime recipient's payment deadlines (a partner that waits three months for its instalments is financing the international organisation).
- The format and calendar of reports, aligned with the donor's deadlines with a margin.
- The planned checks and the right of access to documents.
- The procedure in the event of disallowed expenditure: discussion, opportunity to justify, and risk sharing.
- The prime recipient's commitments: capacity strengthening, coverage of indirect costs, partner participation in decisions and in exchanges with the donor.
Instalment example. Partner budget: 240,000 USD over 12 months, medium risk, quarterly advances. First instalment: 60,000 USD. The next instalment is paid when at least 70% of the funds received have been accounted for: after 42,000 USD has been accounted for, the 2nd instalment is paid. This mechanism limits exposure to roughly one instalment, without blocking activities.
4Monitoring and checking partners' expenditure
Financial monitoring of partners combines:
- Review of reports: consistency with the budget, activities and narrative reports, exchange rates applied.
- Spot checks on site or remotely: a sample of expenses is checked down to the supporting documents and proof of delivery, with a check of bank reconciliations and petty cash.
- Joint programme monitoring: visits to activities, checking that the goods bought are there and in use.
- Audits of the partner or the project depending on the amounts.
The findings of a check are ranked by severity and followed up by an action plan agreed with the partner. Spot check example. A sample of 40 expenses totalling 58,000 USD: 34 fully supported (49,500 USD), 4 with incomplete documents (6,300 USD, which can be supported within 15 days), 2 without documents (2,200 USD). Rate of unsupported expenditure in the sample: 2,200 / 58,000 = 3.8%. The missing documents are requested, the 2,200 USD is provisionally withheld, and training on supporting documents is stepped up; the result is not automatically extrapolated to all expenditure without analysis.
Old, unaccounted-for advances are the main warning sign: a partner that received an instalment six months ago without accounting for it may have a capacity, cash or integrity problem.
5Localisation and sharing indirect costs
Many local partners receive budgets strictly limited to the direct costs of their activities, with no coverage of their overhead costs. They can then neither pay a qualified accountant, nor build reserves, nor invest: their financial weakness, which justifies the controls, is perpetuated by the way they are funded.
Sharing indirect costs has become a recognised good practice: several international organisations and the Inter-Agency Standing Committee (IASC) published guidance in 2022 recommending that local and national partners receive a fair share of indirect costs. Example. A grant of 1,000,000 USD with 7% indirect costs (65,421 USD on direct costs of 934,579 USD); 40% of the direct costs are implemented by a partner. Proportional sharing would give the partner 40% of the indirect costs, about 26,168 USD, to be added to its budget.
Other practices strengthen equity: budgets built with the partner, local staff salaries aligned with fair scales, partner participation in meetings with the donor, visibility of its name, multi-year funding, and a capacity strengthening plan requested by the partner itself rather than imposed.
6Managing difficulties with a partner
Problems with a partner often follow a progression: late reports, then incomplete documents, then unaccounted-for advances, then suspicion of fraud. An early, proportionate response prevents escalation:
- Rapid dialogue to understand the causes (departure of the accountant, cash problem, insecurity).
- Targeted support: training, temporary secondment of a finance officer, an accounting tool.
- Adjusting the modalities: smaller instalments, direct payment of certain expenses, more frequent checks, explained in writing.
- Suspension of payments in the event of persistent non-compliance, with a recovery plan.
- Reporting in the event of suspected fraud, according to the organisation's and the donor's procedure (week 8).
The prime recipient must also look at its own practices: late payments, changes to the reporting format during the project, contradictory requests from several international organisations funding the same partner. Harmonising assessments and reports between the donors of the same partner reduces its workload and improves quality.
Exercise: setting modalities and sharing indirect costs
Situation. You are going to fund a national NGO for 360,000 USD over 12 months. The assessment shows: registration and board in order; accounts kept in a spreadsheet, irregular bank reconciliations; no external audit for 3 years; good field capacity and strong acceptance. Your grant: 1,500,000 USD including 7% indirect costs on direct costs. The partner will implement 360,000 USD of direct costs.
Tasks. 1) What risk level and what modalities? 2) How much indirect cost can you share proportionally? 3) What strengthening plan do you propose?
Answer. Medium to high financial risk (fragile accounting system, no audit), despite good programme capacity. Modalities: quarterly instalments of 90,000 USD, or monthly at the start; accounting for funds with a transaction list; spot check in quarter 1 then six-monthly; project audit at the end of the period. Direct costs of the grant: 1,500,000 / 1.07 = 1,401,869 USD; indirect costs: 98,131 USD. Partner's share: 360,000 / 1,401,869 = 25.7%; shared indirect costs: about 25,200 USD. Plan: accounting software and training, supported monthly reconciliations, a funded external audit of the organisation, a written procurement policy, with the aim of moving to medium or low risk within 12 to 18 months.
Key points
- The prime recipient remains responsible to the donor for partners' expenditure.
- Proportionate capacity assessment → risk level → modalities for payment, accounting for funds and control.
- The agreement flows down the donor's obligations and sets out the prime recipient's commitments.
- Spot checks and action plan; old, unaccounted-for advances are the main warning sign.
- Localisation: share indirect costs, build the budget with the partner, fund capacity strengthening.
💼 Finance, HR and admin jobs
Put this course into practice: the latest jobs in this field.
- AccountantIndian Grameen Services (IGS) · India
- Accounts ExecutiveCentre for Development Orientation and Training (CDOT) · India
- Consultant – ECCE Expert (Grant Project)ChildFund India · India
- Accountant - BhadrachalamWater, Sanitation and Hygiene Institute (WASH Institute) · India
- Chargé(e) de Projet, Empowered FuturesAmref Health Africa · Burkina Faso
Further reading: course references
- Office of Management and Budget (United States) (2024). Uniform Administrative Requirements, Cost Principles, and Audit Requirements for Federal Awards (2 CFR 200). www.ecfr.gov/current/title-2/subtitle-A/chapter-II/part-200
- COSO (2013). Internal Control – Integrated Framework. www.coso.org
- United Nations Sustainable Development Group (UNSDG) (2014). Harmonized Approach to Cash Transfers (HACT) Framework. unsdg.un.org
- Inter-Agency Standing Committee (IASC) (2022). Guidance on the Provision of Overheads to Local and National Partners. interagencystandingcommittee.org
- Inter-Agency Standing Committee (IASC) (2021). The Grand Bargain 2.0 – Endorsed Framework and Annexes. interagencystandingcommittee.org/grand-bargain
- OCHA (2022). Country-Based Pooled Funds Global Guidelines. www.unocha.org/country-based-pooled-funds
- A. Goggins Gregory and D. Howard, Stanford Social Innovation Review (2009). The Nonprofit Starvation Cycle. ssir.org
- ACEVO and New Philanthropy Capital (2004). Full Cost Recovery: A Guide and Toolkit on Cost Allocation. www.thinknpc.org
- Charity Commission for England and Wales (2016). Charities' reserves: building resilience (CC19). www.gov.uk/government/publications/charities-and-reserves-cc19
- Charity Commission and OSCR (2019). Charities SORP (FRS 102). www.charitysorp.org
- IAASB (2016). International Standards on Auditing ISA 700 and ISA 705 (Forming an Opinion and Reporting on Financial Statements; Modifications to the Opinion in the Independent Auditor's Report). www.iaasb.org
- Association of Certified Fraud Examiners (ACFE) (2024). Occupational Fraud: A Report to the Nations. www.acfe.com/fraud-resources/report-to-the-nations-archive
- M. J. Nigrini (Wiley) (2012). Benford's Law: Applications for Forensic Accounting, Auditing, and Fraud Detection. www.wiley.com
- D. R. Cressey (1953). Other People's Money: A Study in the Social Psychology of Embezzlement. archive.org
Weekly quiz
5 demanding questions to check your learning. Answer them all to complete the week.